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There are 3 airports in Shepparton. Melbourne Airport (MEL) is Shepparton’s primary airport with at least domestic flights and international flights departing from its runways every week. As of today, airlines operate out of Melbourne Airport (MEL). Melbourne Airport (MEL) is 90.9 miles from Shepparton and offers nonstop flights to cities. Shepparton’s secondary airport Essendon Airport (MEB) is 94.4 miles from Shepparton and has airlines operating out of it and offers nonstop flights to cities with at least domestic flights and international flights departing each week.